STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK91554.1Predicted dehydrogenase. (380 aa)    
Predicted Functional Partners:
SFK91536.1
Sugar phosphate isomerase/epimerase.
 
  0.989
SFK91516.1
Beta-mannosidase.
 
  
  0.899
SFL07776.1
Hypothetical protein.
  
  0.898
SFK91457.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.885
SFK91476.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
     0.872
SFK91589.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.849
SFK91443.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.835
SFK91571.1
L-glyceraldehyde 3-phosphate reductase.
  
 
  0.801
SFK91497.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
     0.787
SFK91648.1
Sugar phosphate isomerase/epimerase.
  
 
  0.784
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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