STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK98611.1Putative signal transducing protein. (73 aa)    
Predicted Functional Partners:
SFK98631.1
tRNA1(Val) A37 N6-methylase TrmN6; Belongs to the methyltransferase superfamily.
       0.849
SFK98596.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.723
SFK98650.1
Hypothetical protein.
       0.689
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.556
SFL43177.1
TIGR02302 family protein.
  
     0.555
SFK92593.1
N-terminal double-transmembrane domain-containing protein.
  
     0.543
SFK91135.1
Protein of unknown function.
  
     0.538
SFL20755.1
Tetratricopeptide repeat-containing protein.
  
     0.499
SFL08322.1
Poly(3-hydroxybutyrate) depolymerase.
   
    0.467
SFL38436.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.