STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL08373.1Polyhydroxyalkanoate synthesis repressor PhaR. (181 aa)    
Predicted Functional Partners:
SFL08354.1
Hypothetical protein.
 
   
 0.917
SFL08340.1
Polyhydroxyalkanoate synthase.
 
   
 0.865
SFL08322.1
Poly(3-hydroxybutyrate) depolymerase.
 
   
 0.843
SFL59956.1
Polyhydroxyalkanoate synthase.
 
   
 0.765
SFL08390.1
Hypothetical protein.
       0.746
SFL06002.1
Fur family transcriptional regulator, iron response regulator; Belongs to the Fur family.
      
 0.572
fur
Manganese uptake regulator, Fur family; Belongs to the Fur family.
      
 0.422
SFL07497.1
methylmalonyl-CoA mutase.
      
 0.422
SFL35471.1
methylmalonyl-CoA epimerase.
      
 0.422
fur-2
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
      
 0.422
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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