STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL08459.1Amino acid ABC transporter membrane protein 2, PAAT family. (268 aa)    
Predicted Functional Partners:
SFL08491.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
  0.992
SFL08477.1
Amino acid ABC transporter membrane protein 1, PAAT family.
   
0.957
SFL08509.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 0.954
SFK87822.1
Polar amino acid transport system ATP-binding protein.
 0.926
SFL25578.1
L-glutamine ABC transporter ATP-binding protein.
 0.922
SFL17636.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 0.919
SFL25617.1
L-glutamine ABC transporter membrane protein.
 
 
 0.888
SFK87792.1
Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.
  0.860
SFL17669.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
  0.829
SFL37674.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
  0.735
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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