STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL11823.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
SFL11807.1
Hypothetical protein; Belongs to the UPF0434 family.
 
     0.870
SFL11841.1
Thioredoxin.
 
   
 0.858
SFL37654.1
Molybdopterin or thiamine biosynthesis adenylyltransferase.
    
  0.834
SFL53650.1
Molybdopterin or thiamine biosynthesis adenylyltransferase.
    
  0.834
SFL27906.1
DNA repair exonuclease SbcCD ATPase subunit.
    
 0.827
SFL27893.1
DNA repair exonuclease SbcCD nuclease subunit.
    
 0.817
SFL20704.1
Putative mRNA 3-end processing factor.
     
 0.734
SFK98995.1
Ankyrin repeat.
    
 0.490
SFL11857.1
Lysophospholipase L1.
       0.484
SFK81955.1
DNA polymerase III, chi subunit.
  
     0.472
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.