STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL17051.1Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase. (214 aa)    
Predicted Functional Partners:
SFL17068.1
Uncharacterized conserved protein YgbK, DUF1537 family.
  
 0.996
SFL17033.1
Hydroxypyruvate isomerase.
 
 
  0.921
SFL17077.1
3-hydroxyisobutyrate dehydrogenase.
 
    0.905
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.899
SFK80460.1
Fructose-bisphosphate aldolase, class II.
  
 
 0.886
SFL62653.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
    
 0.746
SFL05764.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.737
xylB
Xylulokinase.
  
 
 0.678
SFK91387.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
   
    0.623
SFL24314.1
(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family.
   
    0.623
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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