STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL30450.1Hypothetical protein. (228 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
    
  0.874
SFL30471.1
Trehalase.
 
     0.799
SFL30430.1
Hydroxypyruvate reductase.
       0.787
SFL16629.1
L-idonate 5-dehydrogenase.
    
  0.756
SFL30705.1
Hypothetical protein.
    
  0.756
SFL30490.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
       0.727
SFL30524.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  
    0.665
SFL30504.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.664
SFL30543.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.534
SFK93699.1
Fructuronate reductase.
    
  0.445
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.