STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL30630.1Transcriptional regulator, GntR family. (301 aa)    
Predicted Functional Partners:
SFL30705.1
Hypothetical protein.
 
   
 0.859
SFL30666.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
     0.833
SFK82388.1
Helix-turn-helix.
  
  
 0.723
SFL30614.1
L-fuconolactonase.
 
     0.686
SFL30648.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.652
SFL30685.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
     0.610
SFL28314.1
Ligand-binding sensor domain-containing protein.
   
  
 0.502
SFK92238.1
Transcriptional regulator, GntR family.
 
  
 0.493
SFL16500.1
N-acetylglucosamine 6-phosphate deacetylase.
  
  
 0.480
SFL05782.1
Cupin domain protein.
  
    0.475
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.