STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL40278.1Ubiquinone biosynthesis protein COQ9. (234 aa)    
Predicted Functional Partners:
SFL40303.1
Putative NAD(P)H quinone oxidoreductase, PIG3 family.
  
   0.929
rplB
LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 0.875
rpsU
SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.
       0.714
SFL42813.1
Penicillin-binding protein 2.
  
     0.628
SFK93059.1
Chromosome partitioning protein.
  
     0.615
SFK86223.1
Hypothetical protein.
  
     0.613
SFL01766.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.601
SFL12805.1
Predicted lipid-binding transport protein, Tim44 family.
  
     0.575
SFL54686.1
Peptidoglycan glycosyltransferase.
  
     0.572
SFL11793.1
2-octaprenyl-6-methoxyphenol hydroxylase.
  
 
 0.547
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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