STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL51440.1Predicted DNA-binding protein, contains Ribbon-helix-helix (RHH) domain. (76 aa)    
Predicted Functional Partners:
SFL51422.1
Protein of unknown function.
       0.849
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.839
SFL51381.1
Hypothetical protein.
 
    0.820
SFL37213.1
Hypothetical protein.
  
     0.540
SFL51337.1
Phytochelatin synthase.
       0.482
SFL51359.1
Ca-activated chloride channel family protein.
       0.482
SFL48901.1
Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family.
  
     0.457
SFL67529.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
     0.435
SFL37444.1
Hypothetical protein.
  
     0.424
SFL37762.1
SH3-like domain-containing protein.
  
     0.405
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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