STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL57090.1Cobalt transporter subunit CbtA. (232 aa)    
Predicted Functional Partners:
SFL57116.1
Cobalt transporter subunit CbtB.
  
    0.867
SFL15912.1
Hypothetical protein.
 
     0.765
SFL57075.1
Protein of unknown function.
 
    0.737
SFL47487.1
Cobalamin biosynthesis protein CobW.
  
    0.581
SFL47228.1
Cobalt-precorrin 5A hydrolase / precorrin-3B C17-methyltransferase.
       0.463
SFL47266.1
precorrin-6Y C5,15-methyltransferase (decarboxylating).
       0.463
SFL28772.1
Hemoglobin.
  
     0.439
SFL40796.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.