STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL61039.1Alginate O-acetyltransferase complex protein AlgF. (215 aa)    
Predicted Functional Partners:
SFL61018.1
Alginate biosynthesis protein AlgX.
       0.793
SFL60999.1
Hypothetical protein.
       0.788
SFL60980.1
Alginate O-acetyltransferase complex protein AlgJ.
       0.785
SFL60905.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase.
       0.782
SFL60931.1
Copper-binding protein (NosD).
       0.782
SFL60953.1
Alginate O-acetyltransferase complex protein AlgI; Belongs to the membrane-bound acyltransferase family.
       0.782
SFL61088.1
poly(beta-D-mannuronate) lyase.
       0.716
SFL61064.1
TPR repeat.
       0.693
SFL60888.1
Hypothetical protein.
       0.546
SFL60864.1
Glycosyltransferase Alg8.
       0.431
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.