STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL70232.1Type IV secretion system protein VirB5. (261 aa)    
Predicted Functional Partners:
SFK91710.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
  
 0.978
SFL70190.1
TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.962
SFL70253.1
Transglycosylase SLT domain-containing protein.
 
    0.950
SFL70171.1
Type IV secretion system protein VirB8.
 
     0.947
SFL70129.1
Type IV secretion system protein VirB10.
 
     0.940
SFL70150.1
Type IV secretion system protein VirB9.
 
     0.938
SFL29869.1
Flagellar motor switch protein FliN/FliY.
  
 
 0.928
fliE
Flagellar hook-basal body complex protein FliE.
  
 
 0.898
flgH
Flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
 
 0.894
SFL29836.1
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.885
Your Current Organism:
Loktanella salsilacus
NCBI taxonomy Id: 195913
Other names: Antarctic bacterium R-8904, CIP 108322, DSM 16199, JCM 21636, L. salsilacus, LMG 21507, LMG:21507, Loktanella salsilacus Van Trappen et al. 2004, NBRC 102486, Tanella salinilacus
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