STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_0648Osmoprotectant transport system ATP-binding protein. (402 aa)    
Predicted Functional Partners:
SAMN03159343_0647
Osmoprotectant transport system permease protein.
 0.996
SAMN03159343_0645
Osmoprotectant transport system substrate-binding protein.
 0.991
SAMN03159343_0646
Osmoprotectant transport system permease protein.
 0.990
SAMN03159343_3765
Osmoprotectant transport system substrate-binding protein.
 0.984
SAMN03159343_3768
Osmoprotectant transport system permease protein.
 0.980
SAMN03159343_3766
Osmoprotectant transport system permease protein.
 0.977
SAMN03159343_0515
ABC-2 type transport system ATP-binding protein.
 
    
0.896
SAMN03159343_0323
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.891
SAMN03159343_3375
ATP-binding cassette, subfamily B.
 
     
0.739
SAMN03159343_3767
Osmoprotectant transport system ATP-binding protein.
  
  
 
0.702
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.