STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_0962AraC-type DNA-binding protein. (314 aa)    
Predicted Functional Partners:
SAMN03159343_0965
Ribose transport system ATP-binding protein.
    
  0.811
SAMN03159343_0963
UPF0311 protein SAMN03159343_0963; Belongs to the UPF0311 family.
 
     0.800
SAMN03159343_0964
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.773
SAMN03159343_0966
Ribose transport system substrate-binding protein.
       0.773
SAMN03159343_0967
Amidase.
    
  0.740
SAMN03159343_2419
Glutamate synthase (NADPH/NADH) large chain.
    
  0.728
SAMN03159343_1850
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.670
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.667
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.643
SAMN03159343_0961
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.598
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.