STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_1411Short chain dehydrogenase. (318 aa)    
Predicted Functional Partners:
SAMN03159343_2184
[acyl-carrier-protein] S-malonyltransferase.
  
 0.836
SAMN03159343_1412
Helix-turn-helix domain-containing protein.
 
     0.795
SAMN03159343_2419
Glutamate synthase (NADPH/NADH) large chain.
     
 0.787
SAMN03159343_0488
Acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
 
 0.729
SAMN03159343_3023
CDP-4-dehydro-6-deoxyglucose reductase.
  
 0.701
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.696
SAMN03159343_1551
LPXTG-motif cell wall anchor domain-containing protein.
    
   0.686
SAMN03159343_1519
Uncharacterized protein.
  
 0.663
SAMN03159343_0015
Ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.643
SAMN03159343_0933
Ferredoxin-NADP reductase.
   
 0.643
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.