STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_1783Putative sensory transduction regulator. (165 aa)    
Predicted Functional Partners:
mshA
D-inositol-3-phosphate glycosyltransferase; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.
     0.921
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
      0.877
SAMN03159343_1785
TIGR03086 family protein.
 
     0.824
SAMN03159343_1784
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
       0.773
SAMN03159343_0688
Fido domain-containing protein.
  
     0.769
SAMN03159343_0762
Arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1).
  
     0.753
SAMN03159343_1532
Uncharacterized protein.
  
     0.740
SAMN03159343_2294
Polyketide cyclase / dehydrase and lipid transport.
  
     0.736
SAMN03159343_3549
Uncharacterized protein.
  
     0.687
SAMN03159343_0763
Arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1).
  
     0.683
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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