STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_2620Transcriptional attenuator, LytR family. (455 aa)    
Predicted Functional Partners:
SAMN03159343_1993
Uncharacterized protein.
  
     0.597
SAMN03159343_2636
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
 
   
 0.554
SAMN03159343_3933
Cytochrome c oxidase subunit 1.
  
     0.536
SAMN03159343_0869
Transcriptional attenuator, LytR family.
 
   
0.531
SAMN03159343_2994
Uncharacterized membrane-anchored protein.
   
    0.513
SAMN03159343_2779
UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase.
 
  
 0.491
SAMN03159343_0834
Putative tRNA adenosine deaminase-associated protein.
  
     0.483
SAMN03159343_0285
Uncharacterized protein.
  
     0.462
SAMN03159343_2363
Cell division protein FtsW; Belongs to the SEDS family.
  
  
 0.452
SAMN03159343_3633
Putative gluconeogenesis factor; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.451
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.