STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_2789Uncharacterized protein. (281 aa)    
Predicted Functional Partners:
SAMN03159343_2794
UDP-glucose 4-epimerase.
  
 
  0.657
SAMN03159343_2791
Glycosyltransferase involved in cell wall bisynthesis.
  
 
  0.628
SAMN03159343_0872
annotation not available
  
 
 0.612
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.595
SAMN03159343_3260
Glycogen recognition site of AMP-activated protein kinase.
   
  0.595
SAMN03159343_3608
Malto-oligosyltrehalose trehalohydrolase.
   
  0.595
SAMN03159343_2456
KDO2-lipid IV(A) lauroyltransferase.
 
  
  0.538
SAMN03159343_2790
Uncharacterized protein.
       0.536
SAMN03159343_2792
Predicted glycoside hydrolase or deacetylase ChbG, UPF0249 family.
       0.536
SAMN03159343_2793
Methyltransferase domain-containing protein.
       0.536
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.