STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_3261Linoleoyl-CoA desaturase. (414 aa)    
Predicted Functional Partners:
SAMN03159343_3262
Ferredoxin-NADP reductase.
 
 0.999
SAMN03159343_3263
PucR C-terminal helix-turn-helix domain-containing protein.
 
     0.874
SAMN03159343_1193
Acyl-[acyl-carrier-protein] desaturase.
     
 0.855
SAMN03159343_0015
Ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.848
SAMN03159343_0933
Ferredoxin-NADP reductase.
  
 
 0.848
SAMN03159343_0946
Ferredoxin-NADP reductase.
  
 
 0.848
SAMN03159343_3087
Vanillate O-demethylase ferredoxin subunit.
  
 
 0.848
SAMN03159343_3023
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
 0.738
SAMN03159343_3018
Acyl-coenzyme A thioesterase PaaI, contains HGG motif.
  
     0.727
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.
      
 0.654
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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