STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_3369PAP2 superfamily protein. (337 aa)    
Predicted Functional Partners:
SAMN03159343_3368
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
  0.804
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.664
SAMN03159343_3431
Uncharacterized protein.
  
     0.585
SAMN03159343_3371
3-oxoacyl-[acyl-carrier protein] reductase.
 
 
   0.582
SAMN03159343_0927
Predicted dioxygenase of extradiol dioxygenase family.
  
     0.577
SAMN03159343_0198
Alkaline and neutral invertase.
  
     0.571
SAMN03159343_3370
Aconitase.
       0.537
SAMN03159343_2088
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
  
     0.527
SAMN03159343_2327
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
 
 
  0.508
SAMN03159343_1672
ABC-2 family transporter protein.
  
     0.499
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.