STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_3495Transcriptional regulator, TetR family. (199 aa)    
Predicted Functional Partners:
SAMN03159343_3494
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.939
SAMN03159343_3493
UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.773
SAMN03159343_3496
ATPase family associated with various cellular activities (AAA).
       0.773
SAMN03159343_3491
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
       0.661
SAMN03159343_3492
Uncharacterized protein.
       0.661
SAMN03159343_2777
Glycoside-hydrolase family GH114.
  
     0.493
SAMN03159343_3490
Predicted arabinose efflux permease, MFS family.
       0.475
SAMN03159343_1412
Helix-turn-helix domain-containing protein.
  
     0.456
SAMN03159343_2209
Transcriptional regulator, TetR family.
  
     0.400
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.