STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_3651Fe-S cluster assembly protein SufD. (440 aa)    
Predicted Functional Partners:
SAMN03159343_3653
Fe-S cluster assembly ATP-binding protein.
 0.999
SAMN03159343_3655
Nitrogen fixation protein NifU.
 
 
 0.993
SAMN03159343_3654
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.981
SAMN03159343_3656
Metal-sulfur cluster biosynthetic enzyme.
 
   
 0.945
SAMN03159343_1253
Selenocysteine lyase/Cysteine desulfurase.
 
 0.921
SAMN03159343_3650
Iron-regulated ABC transporter membrane component SufB.
 
   
0.919
SAMN03159343_1004
Cysteine desulfurase family protein, VC1184 subfamily.
 
 0.885
SAMN03159343_3652
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
 
     0.848
SAMN03159343_3649
Predicted transcriptional regulator, ArsR family.
  
    0.839
SAMN03159343_1278
Cysteine desulfurase family protein, VC1184 subfamily.
 
 0.803
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.