STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN03159343_4123Uracil DNA glycosylase superfamily protein. (204 aa)    
Predicted Functional Partners:
SAMN03159343_4122
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.773
SAMN03159343_4124
C4-dicarboxylate transporter/malic acid transport protein.
       0.569
SAMN03159343_0390
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.506
SAMN03159343_1940
tRNA threonylcarbamoyl adenosine modification protein YeaZ.
  
    0.489
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
    0.442
SAMN03159343_0202
Uncharacterized protein.
    
   0.439
SAMN03159343_2039
Single-strand DNA-binding protein.
    
   0.439
SAMN03159343_2985
Single-strand DNA-binding protein.
    
   0.439
SAMN03159343_3887
Single-stranded DNA-binding protein.
    
   0.439
Your Current Organism:
Klenkia marina
NCBI taxonomy Id: 1960309
Other names: Actinobacteria bacterium DSM 45722, CCTCC AB 2012057, CCTCC:AB:2012057, DSM 45722, Geodermatophilus sp. YIM M1316, K. marina, Klenkia marina Montero-Calasanz et al. 2018, YIM M13156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.