PHISP_07005 protein (Phialosimplex sp. HF37)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHISP_07005

Uncharacterized protein. (378 aa)

Predicted Functional Partners:

PHISP_03234

0.974

PHISP_03389

0.971

PHISP_01364

0.970

PHISP_02082

0.969

PHISP_02587

0.960

PHISP_06672

0.959

PHISP_04282

0.956

PHISP_07782

0.954

PHISP_00890

0.954

PHISP_06049

0.949

Your Current Organism:

Phialosimplex sp. HF37

NCBI taxonomy Id: 1960876
Other names: P. sp. HF37

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHISP_00890	PHISP_01364	A0A3M2TEM2	A0A3M2TDB8	Dna-directed rna polymerase ii.	Transcription initiation factor.	0.982
PHISP_00890	PHISP_02082	A0A3M2TEM2	A0A3M2TBA9	Dna-directed rna polymerase ii.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.976
PHISP_00890	PHISP_02587	A0A3M2TEM2	A0A3M2T9T7	Dna-directed rna polymerase ii.	Transcription initiation factor.	0.978
PHISP_00890	PHISP_03234	A0A3M2TEM2	A0A3M2T822	Dna-directed rna polymerase ii.	Uncharacterized protein.	0.971
PHISP_00890	PHISP_03389	A0A3M2TEM2	A0A3M2T7N9	Dna-directed rna polymerase ii.	TATA-box-binding protein.	0.976
PHISP_00890	PHISP_04282	A0A3M2TEM2	A0A3M2T4V5	Dna-directed rna polymerase ii.	Uncharacterized protein.	0.973
PHISP_00890	PHISP_06049	A0A3M2TEM2	A0A3M2SZV3	Dna-directed rna polymerase ii.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
PHISP_00890	PHISP_06672	A0A3M2TEM2	A0A3M2SXZ8	Dna-directed rna polymerase ii.	Transcription initiation factor.	0.975
PHISP_00890	PHISP_07005	A0A3M2TEM2	A0A3M2SWZ6	Dna-directed rna polymerase ii.	Uncharacterized protein.	0.954
PHISP_00890	PHISP_07782	A0A3M2TEM2	A0A3M2SVY6	Dna-directed rna polymerase ii.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.976
PHISP_01364	PHISP_00890	A0A3M2TDB8	A0A3M2TEM2	Transcription initiation factor.	Dna-directed rna polymerase ii.	0.982
PHISP_01364	PHISP_02082	A0A3M2TDB8	A0A3M2TBA9	Transcription initiation factor.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.984
PHISP_01364	PHISP_02587	A0A3M2TDB8	A0A3M2T9T7	Transcription initiation factor.	Transcription initiation factor.	0.995
PHISP_01364	PHISP_03234	A0A3M2TDB8	A0A3M2T822	Transcription initiation factor.	Uncharacterized protein.	0.985
PHISP_01364	PHISP_03389	A0A3M2TDB8	A0A3M2T7N9	Transcription initiation factor.	TATA-box-binding protein.	0.999
PHISP_01364	PHISP_04282	A0A3M2TDB8	A0A3M2T4V5	Transcription initiation factor.	Uncharacterized protein.	0.990
PHISP_01364	PHISP_06049	A0A3M2TDB8	A0A3M2SZV3	Transcription initiation factor.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.983
PHISP_01364	PHISP_06672	A0A3M2TDB8	A0A3M2SXZ8	Transcription initiation factor.	Transcription initiation factor.	0.987
PHISP_01364	PHISP_07005	A0A3M2TDB8	A0A3M2SWZ6	Transcription initiation factor.	Uncharacterized protein.	0.970
PHISP_01364	PHISP_07782	A0A3M2TDB8	A0A3M2SVY6	Transcription initiation factor.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.982