A0A136IPE5 protein (Microdochium bolleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A136IPE5

Uncharacterized protein. (542 aa)

Predicted Functional Partners:

A0A136JE05

0.963

A0A136ITL5

0.942

A0A136IPA0

0.898

A0A136JFD0

0.891

A0A136JES3

0.860

A0A136IUB0

0.836

A0A136JA93

0.815

A0A136JA85

0.806

A0A136JB09

0.802

A0A136JD44

0.802

Your Current Organism:

Microdochium bolleyi

NCBI taxonomy Id: 196109
Other names: M. bolleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A136IPA0	A0A136IPE5	Ceramide very long chain fatty acid hydroxylase; Ceramide hydroxylase involved in the hydroxylation of sphingolipid-associated very long chain fatty acids. Postulated to hydroxylate the very long chain fatty acid of dihydroceramides and phytoceramides at C-2; Belongs to the sterol desaturase family. SCS7 subfamily.	Uncharacterized protein.	0.898
A0A136IPE5	A0A136IPA0	Uncharacterized protein.	Ceramide very long chain fatty acid hydroxylase; Ceramide hydroxylase involved in the hydroxylation of sphingolipid-associated very long chain fatty acids. Postulated to hydroxylate the very long chain fatty acid of dihydroceramides and phytoceramides at C-2; Belongs to the sterol desaturase family. SCS7 subfamily.	0.898
A0A136IPE5	A0A136ITL5	Uncharacterized protein.	PWI domain-containing protein.	0.942
A0A136IPE5	A0A136IUB0	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A136IPE5	A0A136JA85	Uncharacterized protein.	ATP-dependent RNA helicase SUB2.	0.806
A0A136IPE5	A0A136JA93	Uncharacterized protein.	Uncharacterized protein.	0.815
A0A136IPE5	A0A136JB09	Uncharacterized protein.	P68 RNA helicase; Belongs to the DEAD box helicase family.	0.802
A0A136IPE5	A0A136JD44	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.802
A0A136IPE5	A0A136JE05	Uncharacterized protein.	Pre-mRNA splicing factor component-domain-containing protein.	0.963
A0A136IPE5	A0A136JES3	Uncharacterized protein.	Mono-functional DNA-alkylating methyl methanesulfonate N-term-domain-containing protein.	0.860
A0A136IPE5	A0A136JFD0	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.891
A0A136ITL5	A0A136IPE5	PWI domain-containing protein.	Uncharacterized protein.	0.942
A0A136ITL5	A0A136IUB0	PWI domain-containing protein.	Uncharacterized protein.	0.997
A0A136ITL5	A0A136JA85	PWI domain-containing protein.	ATP-dependent RNA helicase SUB2.	0.822
A0A136ITL5	A0A136JA93	PWI domain-containing protein.	Uncharacterized protein.	0.853
A0A136ITL5	A0A136JB09	PWI domain-containing protein.	P68 RNA helicase; Belongs to the DEAD box helicase family.	0.772
A0A136ITL5	A0A136JD44	PWI domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.772
A0A136ITL5	A0A136JFD0	PWI domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.969
A0A136IUB0	A0A136IPE5	Uncharacterized protein.	Uncharacterized protein.	0.836
A0A136IUB0	A0A136ITL5	Uncharacterized protein.	PWI domain-containing protein.	0.997