A0A136J4U4 protein (Microdochium bolleyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A136J4U4

Armadillo-type protein. (2671 aa)

Predicted Functional Partners:

A0A136JHX5

0.979

A0A136J4P2

0.951

A0A136J793

0.940

A0A136JFG6

0.925

A0A136JE82

0.916

A0A136JAJ2

0.915

A0A136JBI4

0.913

A0A136J2Q3

0.908

A0A136J1W2

0.906

A0A136JHF8

0.906

Your Current Organism:

Microdochium bolleyi

NCBI taxonomy Id: 196109
Other names: M. bolleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A136J1W2	A0A136J2Q3	Putative 5S rRNA binding ribosomal protein.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A136J1W2	A0A136J4P2	Putative 5S rRNA binding ribosomal protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
A0A136J1W2	A0A136J4U4	Putative 5S rRNA binding ribosomal protein.	Armadillo-type protein.	0.906
A0A136J1W2	A0A136J793	Putative 5S rRNA binding ribosomal protein.	GTP-binding protein 1.	0.746
A0A136J1W2	A0A136JAJ2	Putative 5S rRNA binding ribosomal protein.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999
A0A136J1W2	A0A136JBI4	Putative 5S rRNA binding ribosomal protein.	40S ribosomal protein S3-like protein; Belongs to the universal ribosomal protein uS3 family.	0.999
A0A136J1W2	A0A136JE82	Putative 5S rRNA binding ribosomal protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
A0A136J1W2	A0A136JFG6	Putative 5S rRNA binding ribosomal protein.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
A0A136J1W2	A0A136JHF8	Putative 5S rRNA binding ribosomal protein.	Ribosomal protein L3-domain-containing protein; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A136J1W2	A0A136JHX5	Putative 5S rRNA binding ribosomal protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.776
A0A136J2Q3	A0A136J1W2	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Putative 5S rRNA binding ribosomal protein.	0.999
A0A136J2Q3	A0A136J4P2	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
A0A136J2Q3	A0A136J4U4	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Armadillo-type protein.	0.908
A0A136J2Q3	A0A136J793	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	GTP-binding protein 1.	0.832
A0A136J2Q3	A0A136JAJ2	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999
A0A136J2Q3	A0A136JBI4	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S3-like protein; Belongs to the universal ribosomal protein uS3 family.	0.999
A0A136J2Q3	A0A136JE82	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
A0A136J2Q3	A0A136JFG6	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
A0A136J2Q3	A0A136JHF8	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein L3-domain-containing protein; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A136J2Q3	A0A136JHX5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.587