OQY69371.1 protein (Polyangiaceae bacterium UTPRO1)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Score

OQY69371.1

Hypothetical protein. (205 aa)

Predicted Functional Partners:

OQY67192.1

0.966

OQY69374.1

0.948

OQY65727.1

0.898

OQY64930.1

0.835

OQY69370.1

0.734

OQY69369.1

0.716

OQY65720.1

0.686

OQY69368.1

0.670

OQY65752.1

0.656

OQY66556.1

0.643

Your Current Organism:

Polyangiaceae bacterium UTPRO1

NCBI taxonomy Id: 1961108
Other names: P. bacterium UTPRO1

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... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OQY64930.1	OQY65720.1	B6D46_15850	B6D46_13530	Nitrite reductase, copper-containing.	Cytochrome c oxidase subunit II.	0.990
OQY64930.1	OQY65727.1	B6D46_15850	B6D46_13565	Nitrite reductase, copper-containing.	Molybdopterin oxidoreductase.	0.992
OQY64930.1	OQY65752.1	B6D46_15850	B6D46_13690	Nitrite reductase, copper-containing.	Respiratory nitrate reductase subunit gamma.	0.795
OQY64930.1	OQY66556.1	B6D46_15850	B6D46_10310	Nitrite reductase, copper-containing.	Formate dehydrogenase subunit alpha.	0.745
OQY64930.1	OQY67192.1	B6D46_15850	B6D46_07525	Nitrite reductase, copper-containing.	Hypothetical protein.	0.868
OQY64930.1	OQY69368.1	B6D46_15850	B6D46_00060	Nitrite reductase, copper-containing.	Hypothetical protein.	0.747
OQY64930.1	OQY69371.1	B6D46_15850	B6D46_00075	Nitrite reductase, copper-containing.	Hypothetical protein.	0.835
OQY64930.1	OQY69374.1	B6D46_15850	B6D46_00090	Nitrite reductase, copper-containing.	Hypothetical protein.	0.802
OQY65720.1	OQY64930.1	B6D46_13530	B6D46_15850	Cytochrome c oxidase subunit II.	Nitrite reductase, copper-containing.	0.990
OQY65720.1	OQY65727.1	B6D46_13530	B6D46_13565	Cytochrome c oxidase subunit II.	Molybdopterin oxidoreductase.	0.999
OQY65720.1	OQY65752.1	B6D46_13530	B6D46_13690	Cytochrome c oxidase subunit II.	Respiratory nitrate reductase subunit gamma.	0.639
OQY65720.1	OQY66556.1	B6D46_13530	B6D46_10310	Cytochrome c oxidase subunit II.	Formate dehydrogenase subunit alpha.	0.478
OQY65720.1	OQY67192.1	B6D46_13530	B6D46_07525	Cytochrome c oxidase subunit II.	Hypothetical protein.	0.830
OQY65720.1	OQY69368.1	B6D46_13530	B6D46_00060	Cytochrome c oxidase subunit II.	Hypothetical protein.	0.609
OQY65720.1	OQY69371.1	B6D46_13530	B6D46_00075	Cytochrome c oxidase subunit II.	Hypothetical protein.	0.686
OQY65720.1	OQY69374.1	B6D46_13530	B6D46_00090	Cytochrome c oxidase subunit II.	Hypothetical protein.	0.793
OQY65727.1	OQY64930.1	B6D46_13565	B6D46_15850	Molybdopterin oxidoreductase.	Nitrite reductase, copper-containing.	0.992
OQY65727.1	OQY65720.1	B6D46_13565	B6D46_13530	Molybdopterin oxidoreductase.	Cytochrome c oxidase subunit II.	0.999
OQY65727.1	OQY65752.1	B6D46_13565	B6D46_13690	Molybdopterin oxidoreductase.	Respiratory nitrate reductase subunit gamma.	0.999
OQY65727.1	OQY66556.1	B6D46_13565	B6D46_10310	Molybdopterin oxidoreductase.	Formate dehydrogenase subunit alpha.	0.999

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

14

PPI enrichment p-value:

1.11e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 103

1.39

2.4

8.86e-11

GO:0044238

Primary metabolic process

11 of 1033

0.43

0.36

0.0011

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

9 of 53

1.63

3.29

2.17e-11

GO:0070180

Large ribosomal subunit rRNA binding

2 of 2

2.4

1.09

0.0098

GO:0019843

rRNA binding

4 of 40

1.4

1.07

0.0029

GO:0003723

RNA binding

5 of 89

1.15

0.89

0.0029

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

9 of 56

1.61

3.29

6.22e-12

GO:0044391

Ribosomal subunit

5 of 14

1.96

3.18

6.49e-08

GO:0015934

Large ribosomal subunit

3 of 8

1.98

1.97

9.75e-05

GO:0015935

Small ribosomal subunit

2 of 6

1.93

1.24

0.0038

GO:0005622

Intracellular anatomical structure

11 of 972

0.46

0.4

0.00011

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:103

Ribosomal protein

10 of 65

1.59

3.36

7.11e-13

CL:107

Ribosomal protein

9 of 58

1.6

3.22

8.40e-12

CL:110

Ribosomal protein

8 of 51

1.6

3.01

2.01e-10

CL:112

Ribosomal protein

7 of 45

1.6

2.71

7.76e-09

CL:155

Structural constituent of ribosome

4 of 16

1.8

2.07

2.61e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

9 of 55

1.62

3.32

6.37e-12

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 40

1.65

2.76

1.68e-08

GOCC:0044391

Ribosomal subunit

4 of 16

1.8

2.09

2.30e-05

GOCC:0015935

Small ribosomal subunit

3 of 9

1.93

1.74

0.00028

GOCC:0043229

Intracellular organelle

10 of 270

0.97

1.14

9.78e-08

GOCC:0022627

Cytosolic small ribosomal subunit

2 of 7

1.86

1.0

0.0114

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

9 of 54

1.63

3.33

8.02e-12

KW-0699

rRNA-binding

4 of 38

1.43

1.25

0.00083

KW-0810

Translation regulation

2 of 5

2.01

1.03

0.0108

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