STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B6D46_02020SMC-Scp complex subunit ScpB; Incomplete; partial in the middle of a contig; missing stop. (285 aa)    
Predicted Functional Partners:
OQY68946.1
Ribosome biogenesis GTPase Der.
 
  
 0.949
OQY67070.1
Exodeoxyribonuclease III.
  
    0.912
OQY68878.1
Cytidylate kinase.
 
  
 0.849
OQY67825.1
Hypothetical protein.
   
 0.745
OQY68898.1
Hypothetical protein.
 
  
 0.734
OQY65673.1
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD.
     0.731
OQY68070.1
Hypothetical protein.
   
0.715
OQY66585.1
Hypothetical protein.
 
 
 0.710
OQY68947.1
GTPase Era.
 
  
 0.676
OQY66300.1
Hypothetical protein.
   
 0.635
Your Current Organism:
Polyangiaceae bacterium UTPRO1
NCBI taxonomy Id: 1961108
Other names: P. bacterium UTPRO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.