STRINGSTRING
Noca_0010 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0010" - Fatty acid hydroxylase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0010Fatty acid hydroxylase (246 aa)    
Predicted Functional Partners:
Noca_0011
GntR family transcriptional regulator (249 aa)
 
          0.964
Noca_2960
Hypothetical protein (158 aa)
   
          0.706
Noca_0012
Hypothetical protein (270 aa)
              0.656
Noca_0013
Hypothetical protein (115 aa)
              0.646
Noca_2519
Hypothetical protein (100 aa)
   
          0.591
Noca_0015
Phospholipid/glycerol acyltransferase (339 aa)
              0.573
Noca_0014
Patatin (290 aa)
              0.573
Noca_1216
Hypothetical protein (442 aa)
   
          0.567
Noca_3954
Nuclear transport factor 2 (124 aa)
   
          0.515
Noca_0391
Limonene-1,2-epoxide hydrolase (134 aa)
   
          0.515
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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