STRINGSTRING
Noca_0018 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0018" - Rhomboid family protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0018Rhomboid family protein (306 aa)    
Predicted Functional Partners:
Noca_0017
Peptidyl-prolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (170 aa)
     
      0.898
Noca_3022
Glutamate synthase (NADH) large subunit (1519 aa)
     
   
  0.687
Noca_1061
Fumarase (571 aa)
   
   
  0.583
Noca_1316
Beta-lactamase domain-containing protein (256 aa)
 
      0.583
Noca_0016
Hypothetical protein (214 aa)
              0.571
Noca_4454
Dehydrogenase, E1 component (726 aa)
     
        0.551
Noca_0205
Hypothetical protein (395 aa)
   
      0.525
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (397 aa)
     
        0.518
Noca_0156
Rhodanese domain-containing protein (111 aa)
 
   
  0.513
Noca_0019
Hypothetical protein (313 aa)
              0.495
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (10%) [HD]