STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0058Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sma:SAV6288 LacI-family transcriptional regulator. (338 aa)    
Predicted Functional Partners:
Noca_3022
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sco:SCO2026 putative glutamate synthase large subunit.
    
 
 0.806
Noca_0057
KEGG: afm:Afu5g00510 hypothetical protein.
 
     0.619
Noca_0056
PFAM: Glycosyl hydrolase family 32, N terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: hma:rrnAC1479 sucrose-6-phosphate hydrolase.
  
  
 0.618
Noca_0059
PFAM: extracellular solute-binding protein, family 1; KEGG: oih:OB0774 sugar ABC transporter sugar-binding protein; TC 3.A.1.1.-.
 
  
 0.581
Noca_3184
Fructose PTS system EIIBC or EIIC component; TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: mmc:Mmcs_0080 phosphotransferase system, fructose IIC component; TC 4.A.2.1.4; TC 4.A.2.1.4; TC 4.A.2.1.4.
     
 0.533
Noca_3185
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mmc:Mmcs_0079 phosphotransferase system, HPr.
   
 
 0.533
Noca_0402
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tte:TTE0461 Transcriptional regulator.
  
   
 0.519
Noca_3685
PFAM: carbohydrate kinase, FGGY; KEGG: mmc:Mmcs_2422 carbohydrate kinase, FGGY; Belongs to the FGGY kinase family.
 
 
 
 0.468
Noca_3959
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pac:PPA0676 transcriptional regulator, GntR family.
  
   
 0.467
Noca_0062
PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase.
 
  
 0.420
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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