STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0071PFAM: regulatory protein, AsnC/Lrp family; KEGG: rha:RHA1_ro03337 probable leucine-responsive regulator. (155 aa)    
Predicted Functional Partners:
Noca_2660
PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO1425 putative AsnC-family transcriptional regulatory protein.
  
     0.756
Noca_0070
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sco:SCO3362 hypothetical protein.
 
   
 0.707
Noca_1294
PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO2928 AsnC-family transcriptional regulator.
  
     0.703
Noca_0069
Hypothetical protein.
       0.422
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.