STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0072PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: bcz:BCZK0803 ornithine cyclodeaminase. (306 aa)    
Predicted Functional Partners:
Noca_0082
PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV1734 oxidoreductase.
 
  
 0.767
Noca_0083
KEGG: sma:SAV1733 hypothetical protein.
 
     0.695
Noca_0084
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO6291 secreted oxidase.
 
     0.673
Noca_0085
PFAM: dihydrodipicolinate synthetase; KEGG: sma:SAV1731 putative dihydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.631
Noca_1848
PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro00338 probable sarcosine oxidase beta subunit.
 
  
 0.569
Noca_0074
KEGG: shm:Shewmr7_0115 hypothetical protein.
       0.488
Noca_0073
PFAM: helix-turn-helix domain protein; KEGG: nfa:nfa13110 putative DNA-binding protein.
       0.471
Noca_0075
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: cgb:cg1413 secreted sugar-binding protein; TC 3.A.1.2.-.
 
     0.435
Noca_0081
PFAM: peptidase M19, renal dipeptidase; KEGG: mlo:mlr6286 similar to dipeptidase.
 
     0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.