STRINGSTRING
Noca_0073 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0073" - Helix-turn-helix domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0073Helix-turn-helix domain-containing protein (210 aa)    
Predicted Functional Partners:
Noca_0074
Hypothetical protein (134 aa)
              0.859
Noca_3162
AzlC family protein (236 aa)
 
        0.638
Noca_0075
Sugar ABC transporter periplasmic component-like protein (336 aa)
              0.585
Noca_0078
Short-chain dehydrogenase/reductase SDR (271 aa)
              0.533
Noca_0077
Inner-membrane translocator (331 aa)
              0.533
Noca_0076
ABC transporter-like protein (507 aa)
              0.533
Noca_3514
Benzoate transporter (361 aa)
 
        0.527
Noca_0072
Ornithine cyclodeaminase (306 aa)
              0.502
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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