STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0094PFAM: Asp/Glu racemase; KEGG: chy:CHY_1338 hydantoin racemase. (239 aa)    
Predicted Functional Partners:
Noca_0096
PFAM: protein of unknown function DUF917; KEGG: mlo:mll9130 hypothetical protein.
 
     0.734
Noca_0095
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mlo:mll9131 hydantoinase.
 
   
 0.733
Noca_0199
Hydantoin racemase-like protein; KEGG: sil:SPO1461 hypothetical protein.
  
     0.688
Noca_3383
PFAM: polysaccharide deacetylase; KEGG: mmc:Mmcs_2257 polysaccharide deacetylase.
 
     0.510
Noca_0093
PFAM: protein of unknown function DUF1445; KEGG: pst:PSPTO_5379 hypothetical protein; Belongs to the D-glutamate cyclase family.
       0.461
Noca_3417
PFAM: Asp/Glu racemase; KEGG: dar:Daro_1336 hydantoin racemase.
 
    
0.461
Noca_1144
KEGG: rha:RHA1_ro01566 possible urate oxidase, N-terminal.
 
     0.422
Noca_0092
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: tfu:Tfu_1968 allophanate hydrolase subunit 2.
       0.401
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.