STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0106PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: mmc:Mmcs_0342 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins. (209 aa)    
Predicted Functional Partners:
Noca_0107
PFAM: aldo/keto reductase; KEGG: sma:SAV1050 oxidoreductase.
       0.596
Noca_1190
PFAM: conserved hypothetical protein 341; KEGG: sco:SCO4737 integral membrane protein.
  
     0.550
Noca_2678
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO4436 lyase.
  
     0.529
Noca_1664
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0484 transcriptional regulator, TetR family.
  
     0.521
Noca_1513
TIGRFAM: purine nucleoside phosphorylase; PFAM: purine and other phosphorylases, family 1; KEGG: oih:OB2345 purine nucleoside phosphorylase.
  
    0.416
Noca_2677
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: nfa:nfa43930 putative transcriptional regulator.
  
     0.416
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.