STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0109KEGG: sco:SCO1740 hypothetical protein. (797 aa)    
Predicted Functional Partners:
Noca_0751
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bha:BH2449 flagellar hook protein.
  
 
 0.796
Noca_0761
KEGG: lxx:Lxx06310 flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
   
 
 0.770
Noca_1037
PFAM: pentapeptide repeat protein.
  
   0.736
Noca_0436
KEGG: pca:Pcar_1759 hypothetical protein.
  
    0.702
Noca_0110
Hypothetical protein.
       0.664
Noca_3002
PFAM: polysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05189 possible xylose transporter.
 
   
 0.663
Noca_1775
Hypothetical protein.
  
    0.645
Noca_4548
PFAM: ribonuclease BN; KEGG: mpa:MAP1682c hypothetical protein.
  
   
 0.641
Noca_0759
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
 
 0.582
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lxx:Lxx06330 flagellar basal-body protein.
   
 
 0.566
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.