Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0119PFAM: protein of unknown function DUF1503; KEGG: sco:SCO1068 hypothetical protein. (246 aa)    
Predicted Functional Partners:
Noca_2364
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: plu:plu2127 hypothetical protein.
   
 
 0.643
Noca_0118
PFAM: protein of unknown function DUF88; KEGG: dvu:DVU0091 hypothetical protein.
       0.551
Noca_2467
PFAM: protein of unknown function DUF1503; KEGG: tfu:Tfu_2998 hypothetical protein.
  
     0.507
Noca_4463
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4232 hypothetical protein.
  
     0.495
Noca_1476
KEGG: sco:SCO6136 transmembrane protein.
  
     0.477
Noca_0120
KEGG: tfu:Tfu_1447 ABC-type multidrug transport system ATPase component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.461
Noca_0121
PFAM: ABC-2 type transporter; KEGG: sco:SCO5382 putative ABC transporter, integral membrane subunit.
       0.461
Noca_1479
PFAM: protein of unknown function DUF58; KEGG: mpa:MAP3217c hypothetical protein.
  
     0.423
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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