STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0123PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_3220 transcriptional regulator, TetR family. (187 aa)    
Predicted Functional Partners:
Noca_0122
Alkane 1-monooxygenase; PFAM: Rubredoxin-type Fe(Cys)4 protein; fatty acid desaturase; KEGG: nfa:nfa46180 putative alkane-1-monooxygenase.
 
     0.854
Noca_4490
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sco:SCO7513 secreted hydrolase.
  
     0.536
Noca_3525
KEGG: sco:SCO1535 hypothetical protein.
  
     0.530
Noca_1733
Hypothetical protein.
  
     0.507
Noca_4603
KEGG: sco:SCO2788 hypothetical protein.
  
     0.439
Noca_4463
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4232 hypothetical protein.
 
     0.433
Noca_3002
PFAM: polysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05189 possible xylose transporter.
  
     0.431
Noca_4417
PFAM: nuclear transport factor 2; KEGG: mpa:MAP0541c hypothetical protein.
 
     0.417
Noca_0124
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4524 transmembrane efflux protein.
  
  
 0.411
Noca_0189
KEGG: sco:SCO2686 LuxR-family transcriptional regulator.
  
     0.401
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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