Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0128KEGG: nha:Nham_2367 hypothetical protein. (435 aa)    
Predicted Functional Partners:
Noca_1922
Hypothetical protein.
  
    0.780
Noca_0129
Hypothetical protein.
       0.773
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
 
     0.769
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
 
   
 0.767
Noca_4019
PFAM: metallophosphoesterase; KEGG: swo:Swol_2226 hypothetical protein.
  
     0.755
Noca_4290
PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein.
 
     0.731
Noca_3124
PFAM: NLP/P60 protein; KEGG: sco:SCO4793 NPL/P60 family secreted protein.
 
  
 0.724
Noca_0189
KEGG: sco:SCO2686 LuxR-family transcriptional regulator.
  
     0.723
Noca_2318
KEGG: sma:SAV2509 hypothetical protein.
  
     0.723
Noca_3585
KEGG: tfu:Tfu_2575 hypothetical protein.
  
     0.717
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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