Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
Noca_0135Hypothetical protein. (223 aa)    
Predicted Functional Partners:
Noca_1104
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: xfa:XF2728 type I restriction-modification system DNA methylase.
  
  
 0.819
Noca_0134
Hypothetical protein.
       0.697
Noca_1105
PFAM: restriction modification system DNA specificity domain; KEGG: xfa:XF2726 type I restriction-modification system specificity determinant.
  
  
 0.693
Noca_1106
PFAM: restriction modification system DNA specificity domain; KEGG: hpa:HPAG1_0832 HP0790-like protein.
  
  
 0.693
Noca_1587
KEGG: stc:str1376 type II restriction-modification system modification subunit.
  
  
 0.682
Noca_3809
PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO2863 helicase.
  
  
 0.468
Noca_2280
PFAM: helicase domain protein; type III restriction enzyme, res subunit; restriction endonuclease; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sus:Acid_1698 type III restriction enzyme, res subunit.
  
  
 0.426
Noca_1086
PFAM: type III restriction enzyme, res subunit; KEGG: pac:PPA1612 putative type III restriction enzyme.
  
  
 0.420
Noca_0133
ATP-dependent DNA helicase, RecQ-like protein; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV2450 putative ATP-dependent DNA helicase.
       0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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