Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_0139PFAM: zinc finger, SWIM domain protein; KEGG: sma:SAV368 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Noca_0138
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO1167 helicase.
 
    0.953
Noca_0137
PFAM: glutathione peroxidase; KEGG: nfa:nfa46650 putative glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.557
Noca_0176
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4311 hypothetical protein.
 
     0.457
Noca_0488
KEGG: sma:SAV4734 hypothetical protein.
  
     0.444
Noca_1471
KEGG: sco:SCO1819 integral membrane protein.
  
     0.428
Noca_3338
PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase.
  
     0.420
Noca_3688
PFAM: extracellular solute-binding protein, family 1; KEGG: bcl:ABC3585 sugar ABC transporter substrate-binding protein; TC 3.A.1.1.-.
  
     0.408
Noca_0136
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01949 multidrug resistance transporter, MFS superfamily.
       0.407
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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