STRINGSTRING
Noca_0139 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0139" - Zinc finger SWIM domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0139Zinc finger SWIM domain-containing protein (226 aa)    
Predicted Functional Partners:
Noca_0138
SNF2-like protein (903 aa)
        0.997
Noca_0137
Glutathione peroxidase (162 aa)
              0.651
Noca_1675
Helicase domain-containing protein (723 aa)
        0.542
Noca_1329
Cobalt ABC transporter, inner membrane subunit CbiQ (222 aa)
   
          0.511
Noca_1330
Cobalt ABC transporter ATPase (270 aa)
   
          0.501
Noca_1327
Cobalamin (vitamin B12) biosynthesis protein CbiM (229 aa)
   
          0.473
Noca_0136
EmrB/QacA family drug resistance transporter (504 aa)
              0.470
Noca_2336
Hypothetical protein (144 aa)
   
          0.456
Noca_1499
NmrA family protein (224 aa)
   
          0.440
Noca_2858
Hypothetical protein (402 aa)
   
          0.433
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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