Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0142PFAM: protein of unknown function DUF302; KEGG: nfa:nfa41010 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Noca_0141
PFAM: protein of unknown function DUF156; KEGG: cef:CE0057 hypothetical protein.
 
     0.847
Noca_0143
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: nfa:nfa18780 putative thioredoxin; Belongs to the thioredoxin family.
 
     0.817
Noca_0145
KEGG: cgb:cg1481 hypothetical protein.
       0.583
Noca_1672
KEGG: mmr:Mmar10_0244 hypothetical protein.
 
     0.571
Noca_0144
PFAM: MMPL domain protein; KEGG: nfa:pnf2660 hypothetical protein.
       0.547
Noca_0140
PFAM: regulatory protein, TetR; KEGG: fra:Francci3_2248 transcriptional regulator, TetR family.
       0.485
Noca_1673
Hypothetical protein; KEGG: mes:Meso_2289 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
    0.446
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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