Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0153KEGG: pac:PPA2088 hypothetical protein. (234 aa)    
Predicted Functional Partners:
aat
Leucyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
 
     0.756
Noca_1427
KEGG: pac:PPA1688 hypothetical protein.
  
     0.754
Noca_0795
KEGG: sco:SCO3177 hypothetical protein.
  
     0.729
Noca_0299
KEGG: pac:PPA2178 hypothetical protein.
  
     0.715
Noca_3369
KEGG: dra:DR0603 cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase domains protein.
  
     0.667
Noca_0449
KEGG: sco:SCO3402 secreted protein.
  
     0.653
Noca_0254
PFAM: amino acid-binding ACT domain protein; KEGG: pac:PPA1121 hypothetical protein.
  
     0.646
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
  
     0.624
Noca_1800
KEGG: fal:FRAAL2022 hypothetical protein.
  
     0.623
Noca_1223
KEGG: pac:PPA1330 hypothetical protein.
  
     0.618
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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