STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0171KEGG: sth:STH3328 hypothetical protein. (142 aa)    
Predicted Functional Partners:
Noca_0172
PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: rha:RHA1_ro02638 hypothetical protein.
  
    0.720
Noca_2495
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.719
Noca_0170
PFAM: prephenate dehydratase; KEGG: rpa:RPA3695 chorismate mutase/prephenate dehydratase.
  
    0.694
Noca_3464
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
  
 0.636
Noca_2862
PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: dsy:DSY4848 hypothetical protein.
 
   
 0.623
Noca_1516
ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: sco:SCO5188 putative ATP-dependent DNA helicase.
  
 
 0.594
Noca_0024
Cell elongation-specific peptidoglycan D,D-transpeptidase; PFAM: penicillin-binding protein, transpeptidase; KEGG: fal:FRAAL6753 putative penicillin-binding protein PbpA.
 
   
 0.549
Noca_3461
TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: fal:FRAAL1920 rod shape-determining membrane protein; cell elongation; Belongs to the SEDS family.
 
   
 0.542
Noca_0167
PFAM: protein of unknown function UPF0016; KEGG: fal:FRAAL0931 hypothetical protein.
 
   0.507
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
 
 0.495
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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