Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_0184Hypothetical protein. (356 aa)    
Predicted Functional Partners:
Noca_0183
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: nfa:nfa46820 putative hydrolase.
       0.768
Noca_0185
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: fra:Francci3_3765 biotin/lipoyl attachment.
       0.670
Noca_0182
KEGG: sma:SAV4365 molybdopterin-guanine dinucleotide biosynthesis protein.
       0.559
Noca_0181
Hypothetical protein; KEGG: sco:SCO3828 molybdopterin-guanine dinucleotide biosynthesis protein.
       0.449
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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