STRINGSTRING
Noca_0189 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0189" - LuxR family transcriptional regulator in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0189LuxR family transcriptional regulator (340 aa)    
Predicted Functional Partners:
Noca_4290
ATPase domain-containing protein (315 aa)
   
          0.754
Noca_4682
Hypothetical protein (735 aa)
   
          0.749
Noca_3605
Integral membrane protein (118 aa)
   
          0.743
Noca_0266
Lipoprotein (234 aa)
   
          0.733
Noca_3958
Hypothetical protein (118 aa)
   
          0.727
Noca_2037
Hypothetical protein (154 aa)
   
          0.714
Noca_0488
Hypothetical protein (384 aa)
   
          0.710
Noca_4321
ArsR family transcriptional regulator (200 aa)
   
          0.704
Noca_1406
Hypothetical protein (246 aa)
   
          0.675
Noca_2350
Hypothetical protein (65 aa)
   
          0.662
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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