Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0199Hydantoin racemase-like protein; KEGG: sil:SPO1461 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Noca_0198
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sil:SPO1469 3-ketosteroid dehydrogenase, putative.
 
     0.813
Noca_0200
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B1003 putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
     0.810
Noca_0201
PFAM: isochorismatase hydrolase; KEGG: bur:Bcep18194_C7071 isochorismatase hydrolase.
 
     0.806
Noca_3417
PFAM: Asp/Glu racemase; KEGG: dar:Daro_1336 hydantoin racemase.
  
     0.752
Noca_0203
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bbr:BB3064 hypothetical protein.
       0.692
Noca_0094
PFAM: Asp/Glu racemase; KEGG: chy:CHY_1338 hydantoin racemase.
  
     0.688
Noca_0204
2,3-dimethylmalate lyase; KEGG: bbr:BB0718 carboxyvinyl-carboxyphosphonate phosphorylmutase.
       0.688
Noca_0202
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0595 gluconate 5-dehydrogenase.
       0.686
Noca_0197
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sco:SCO2226 bi-functional protein (secreted alpha-amylase/dextrinase).
       0.536
Noca_0205
RNAse Z; KEGG: rme:Rmet_5998 hypothetical protein.
       0.448
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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