STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0199Hydantoin racemase-like protein; KEGG: sil:SPO1461 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Noca_3417
PFAM: Asp/Glu racemase; KEGG: dar:Daro_1336 hydantoin racemase.
  
  
  0.974
Noca_1144
KEGG: rha:RHA1_ro01566 possible urate oxidase, N-terminal.
 
  
  0.923
Noca_4086
PFAM: amidohydrolase; KEGG: ana:alr5010 D-hydantoinase.
    
  0.904
Noca_0198
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sil:SPO1469 3-ketosteroid dehydrogenase, putative.
 
     0.815
Noca_0200
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B1003 putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
     0.813
Noca_0201
PFAM: isochorismatase hydrolase; KEGG: bur:Bcep18194_C7071 isochorismatase hydrolase.
 
     0.807
Noca_0203
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bbr:BB3064 hypothetical protein.
       0.693
Noca_0094
PFAM: Asp/Glu racemase; KEGG: chy:CHY_1338 hydantoin racemase.
  
     0.688
Noca_0204
2,3-dimethylmalate lyase; KEGG: bbr:BB0718 carboxyvinyl-carboxyphosphonate phosphorylmutase.
       0.687
Noca_0202
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0595 gluconate 5-dehydrogenase.
       0.686
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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