Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0205RNAse Z; KEGG: rme:Rmet_5998 hypothetical protein. (395 aa)    
Predicted Functional Partners:
Noca_0207
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_1630 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.593
Noca_0204
2,3-dimethylmalate lyase; KEGG: bbr:BB0718 carboxyvinyl-carboxyphosphonate phosphorylmutase.
     
 0.511
Noca_0209
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_B1413 acyl-CoA dehydrogenase-like.
 
     0.507
Noca_0202
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0595 gluconate 5-dehydrogenase.
       0.506
Noca_0206
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa33590 hypothetical protein.
       0.503
Noca_0208
PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHB237 2-hydroxymuconic semialdehyde hydrolase.
       0.503
Noca_0203
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bbr:BB3064 hypothetical protein.
     
 0.500
rph
RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
  
 0.486
Noca_0201
PFAM: isochorismatase hydrolase; KEGG: bur:Bcep18194_C7071 isochorismatase hydrolase.
       0.469
Noca_4681
HDIG domain protein; KEGG: sma:SAV4299 putative RNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; HDIG domain protein; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.463
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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